Expression Resources
- Gene Expression Omnibus (GEO) NCBI's GEO is a gene expression and hybridization array data repository, as well as a curated, online resource for gene expression data browsing, query and retrieval.
- The ArrayExpress Database EBI. Database to maintain the results of DNA microarray based experiments
- Stanford Microarray Database (SMD) SMD stores raw and normalized data from microarray experiments, as well as their corresponding image files. In addition, SMD provides interfaces for data retrieval, analysis and visualization. Data is released to the public at the researcher's discretion or upon publication.
- UW Center for Expression Arrays (CEA) Data Pubilcation Site UW CEA site for Web based publication of expression array data. Public expression experiment data may be downloaded from this site.
- sagenet.org Website for sagenet.org, a source of information about Serial Analysis of Gene Expression (SAGE).
- SAGE Genie NCI's SAGE Genie provides a powerful set of tools to provide highly intuitive visual displays of Serial Analysis of Gene Expression (SAGE) data from cells and tissues. Home of the SAGE Anatomic Viewer.
- PubGeneTM Gene Database and Tools PubGene. Public resource for the development of genetic networks based on literature associations between genes. Gene expression data can be submitted for network analysis.
- Nature Genetics Array Supplement 1999 only
(Nature Publishing Group) Multiple review articles on DNA microarrays published in Nature Genetics 1999 supplement.
- GeneChips.com Leming Shi. Informational resource about the methodologies, databases and companies involved DNA microarrays
- X Genome NCGR. The X Genome Initiative (XGI) is a comprehensive integrated system for the storage, analysis and visualization of DNA sequences.
Structure & Function
- Cellupedia The Cellupedia is an excellent online resource for self-education about the structure and function of higher cells and their components
- A Web Atlas of Cellular Structures Extensive atlas of cellular structures maintained by the Beckman Institute for Advanced Science and Technology at the University of Illinois
- Internet Atlas of Histology Extensive set of histological specimens maintained online by the College of Medicine at the University of Illinois at Urbana-Champaign
- CELLS Alive! Excellent collection of microscopy images, both still, motion and animation
- WWW Virtual Library of Biochemistry and Cell Biology The Virtual Library of Biochemistry and Cell Biology is a collection of links to intermediate to advanced topics in Biochemistry and Cell Biology, and is part of the WWW Virtual Library (VL). The VL is the oldest catalog of the web, started by Tim Berners-Lee, the creator of html and the web itself.
Gene Function
- RNA Interference and Gene Silencing: History and Overview Comprehensive resource on RNA interference provided by AMBION
- Maize Targeted Mutagenesis Database (MTMDB) MTMDB is a transposon library in maize for the purpose of targeted selection of gene knockouts
- Gene Knockouts
This gene knockout database is created at Frontiers in Bioscience and is authored by Siamak Tabibzadeh and John Lee Elzie - Science Functional Genomics The Science Functional Genomics site provides a portal to genomics and post genomics infromation
Metabolism
- Biocarta Online "open source" collections of graphicla maps depecting molecular relationships from areas of active bioresearch
- Kyoto Encyclopedia of Genes and Genomes Kyoto University. KEGG is an integrative database of genomic data from multiple different species with maps of the biochemical pathways in which many of the genes function.
Signal Transduction
- Science's STKE : Signal Transduction Knowledge Environment
1997-2007
(HighWire/American Association for the Advancement of Science) Link connects to "Science Signaling." Back issues of "Science's STKE : Signal Transduction Knowledge Environment" are also included here. Personalization features required individual free registration. - Phospho ELM. A database of kinase phosphorylation sites with a search interface for phosphorylation site prediction.
- Prediction of Subcellular Location CBS. Predictive algorithm for the subcellular localization from the primary protein sequence
- G-protein-coupled Receptor DataBase GCRDb provides motif and alignment information, mutant data, associated diseases and an interactive interface that allows sorting by ligand, species and signaling mechanism.
- COPE Cytokine Online Pathfinder Encyclopedia provides a compendium of thousands of members of the cytokine family with concise background and signaling mechanism.
- Alliance for Cellular Signaling South Western. Informational site about the Alliance for Cellular Signaling which is a multi-disciplinary consortium examining G-protein signaling.
- Atlas of Genetics and Cytogenetics (University Hospital, Poitiers, France) A database of cancer types, diseases, and the genetic factors involved.
