Nucleic Acids
- ENTREZ Nuclotide Entrez Nucleotides database is a collection of sequences from several sources, including GenBank, RefSeq, and PDB
- University of California Santa Cruze (UCSC) Genome Bioinformatics Site This site contains the reference sequence for the human genome and working drafts for the mouse, rat, and SARS genomes. Also known as "The Golden Path"
- TIGR Database TIGR. Collection of genomic databases for multiple species providing sequence, cellular function,tissue specific expression and taxonomic information
- NCBI Map Viewer The Map Viewer supports search and display of genomic information by chromosomal position for a select group of Entrez Genomes
- Ensembl Ensembl presents up-to-date sequence data and the best possible annotation for metazoan genomes. Available now are human, mouse, rat, fugu, zebrafish, mosquito, Drosophila, C. elegans, and C. briggsae
- more Nucleic Acid resources...
Proteins
- Protein Data Bank RCSB. Primary database archive of experimentally determined three-dimensional structures of biological macromolecules
- Robetta
![ROBETTA provides both ab initio and comparative models of protein domains. It uses the ROSETTA fragment insertion method [Simons et al. J Mol Biol 1997;268:209-225]. Comparative models are built from Parent PDBs detected by UW-PDB-BLAST, FFAS03, or 3DJury-A1 and aligned by the K*SYNC alignment method. Loop regions are assembled from fragments and optimized to fit the aligned template structure. The procedure is fully automated.](/images/i.gif "ROBETTA provides both ab initio and comparative models of protein domains. It uses the ROSETTA fragment insertion method [Simons et al. J Mol Biol 1997;268:209-225]. Comparative models are built from Parent PDBs detected by UW-PDB-BLAST, FFAS03, or 3DJury-A1 and aligned by the K*SYNC alignment method. Loop regions are assembled from fragments and optimized to fit the aligned template structure. The procedure is fully automated.")
Provides both ab initio and comparative models of protein domains - Entrez Protein Database The NCBI protein database derived from Swiss-Prot, PIR, PDB and translations of the GenBank sequence records.
- Entrez Structures NCBI. The NCBI database of NMR and x-ray crystalograph based 3D protein structures.
- ENZYME Enzyme nomenclature resource based on recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB). Includes live links to functional information and sequence data.
- more Protein resources...
Other Molecules
- Sugabase Carbohydrate-NMR database that combines CarbBank complex carbohydrate structure data with proton and carbon chemical shift values
- Klotho Biochemical Compounds Database Washington University maintains this listing of chemical structures and terminology.
- LIGAND Chemical database for enzyme reactions
- Complex Carbohydrate Research Center University of Georgia. Supports CCRC-Net neural network recognition system for identifying oligosaccharides from gas chromatography and nuclear magnetic resonance spectra. Includes CarbBank and the Complex Carbohydrate Structure Database (CCSD)